This is the labs wiki of the GenOUEST platform. It lists and describes the internal projects of the platform. They focus on bioinformatics though some of them are pure IT software created, at first, for internal use. All softwares here are free and open source.

Projects can be made internally only, or with other teams collaborations, wordwild.

• iziWorkFlow
  • Web based diagram editor. Its audience is developpers needing a graphical interface to build or visualize some diagrams/components above their program. It requires no installation on desktop. End user can create a diagram, zoom in/out, copy/paste etc… and save the file to XML. The developper describes the available components in a XML config file as well as the constraints between the components to link them (with hierarchical level description).

• Logol Software Suite
  • The Logol Software Suite is a set of software composed of a Logol language interpreter(biological patterns) and pattern search tool, a graphical web-based editor, and a result analyser. It focuses on DNA, RNA or protein sequences, help with a grammar file describing a pattern to be found. Result files contain the matches on the sequence(s) with all required details. Pattern description supports (among others) word complement, overlaps, substitution and distance errors as well as variables usage.

• Opal
  • A toolkit to ease the deployment of web-services for scientific programs. Using this toolkit, you can deploy web-services which allow users to execute jobs on a cluster. It is developed by the NBCR in San Diego, US. We are working with the NBCR team to add some new features and fix a few bugs.

• Symfony
  • Symfony is a quite popular MVC PHP framework. We have chosen it to develop a new environment for the creation of customisable web interfaces. We have created two plugins (sfPHPOpenIDPlugin and sfJobManagerPlugin) for symfony and released them to the public. sfPHPOpenIDPlugin allows users to login using OpenID. sfJobManagerPlugin brings SGE job management support to your symfony applications.

• Wsdl wizard
  • We developed a web-based GUI to ease the use of webservices. It uses WSDL files and displays a GWT interface where users can choose an operation, add some input data and then invoke the service to retrieve output data.